STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001050195_01903Unannotated protein. (112 aa)    
Predicted Functional Partners:
DEQ80_05260
Unannotated protein.
  
    0.786
DEQ80_09535
Unannotated protein.
  
  
 0.777
DEQ80_09530
Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.773
ribA
Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
  
    0.725
DEQ80_09555
Unannotated protein.
  
    0.662
DEQ80_09545
Unannotated protein.
       0.661
DEQ80_09540
Unannotated protein.
       0.661
DEQ80_09560
Unannotated protein.
       0.645
GCA_001050195_01896
Unannotated protein.
       0.645
DEQ80_01135
Unannotated protein; Belongs to the CDS family.
    
 0.584
Your Current Organism:
Anaerolinea thermolimosa
NCBI taxonomy Id: 229919
Other names: A. thermolimosa, Anaerolinea thermolimosa Yamada et al. 2006, DSM 16554, JCM 12577, anaerobic filamentous bacterium IMO-1, strain IMO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.