STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEQ80_02310Unannotated protein. (275 aa)    
Predicted Functional Partners:
DEQ80_01060
Unannotated protein.
   
 
 0.794
GCA_001050195_01184
Unannotated protein.
 
   
 0.785
DEQ80_01215
Unannotated protein.
  
     0.775
GCA_001050195_03591
Unannotated protein.
  
     0.775
GCA_001050195_01186
Unannotated protein.
 
   
 0.774
GCA_001050195_01600
Unannotated protein.
     
 0.766
GCA_001050195_01187
Unannotated protein.
 
   
 0.762
GCA_001050195_01188
Unannotated protein.
  
     0.720
DEQ80_02315
Unannotated protein.
       0.658
DEQ80_12010
Unannotated protein.
  
     0.608
Your Current Organism:
Anaerolinea thermolimosa
NCBI taxonomy Id: 229919
Other names: A. thermolimosa, Anaerolinea thermolimosa Yamada et al. 2006, DSM 16554, JCM 12577, anaerobic filamentous bacterium IMO-1, strain IMO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.