STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selASelenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (460 aa)    
Predicted Functional Partners:
KPL72927.1
Segregation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
KPL74753.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.914
KPL72585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.836
KPL72905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.723
KPL73016.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.723
KPL70579.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.723
KPL71693.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.630
KPL71694.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.630
KPL70429.1
Sodium:proton exchanger; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
    0.630
Your Current Organism:
Leptolinea tardivitalis
NCBI taxonomy Id: 229920
Other names: DSM 16556, JCM 12579, L. tardivitalis, Leptolinea tardivitalis Yamada et al. 2006, anaerobic filamentous bacterium YMTK-2, strain YMTK-2
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