STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL84953.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
aguA
Agmatine deiminase; Catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.981
KPL91775.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL87434.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL87008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL81853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL79819.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL79899.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL75780.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
KPL84954.1
Catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.888
KPL80794.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.860
Your Current Organism:
Levilinea saccharolytica
NCBI taxonomy Id: 229921
Other names: DSM 16555, JCM 12578, L. saccharolytica, Levilinea saccharolytica Yamada et al. 2006, anaerobic filamentous bacterium KIBI-1, strain KIBI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.