STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL84850.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
KPL84849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.814
KPL80686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.713
KPL87466.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.620
KPL85761.1
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.617
KPL84977.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.602
KPL90502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.595
KPL84848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.582
KPL91752.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.581
KPL86990.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.575
lysA
Hypothetical protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.559
Your Current Organism:
Levilinea saccharolytica
NCBI taxonomy Id: 229921
Other names: DSM 16555, JCM 12578, L. saccharolytica, Levilinea saccharolytica Yamada et al. 2006, anaerobic filamentous bacterium KIBI-1, strain KIBI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.