Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OEG74118.1Curli production assembly protein CsgE; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
OEG74120.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.964
OEG74119.1
Curli production assembly protein CsgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.959
OEG72081.1
Curli production assembly/transport protein CsgG; Involved in the stability of the curlin proteins during assembly; involved in the secretion of the major curlin subunit CsgA across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.861
OEG74606.1
Flagellar biosynthesis protein FlgT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.772
OEG72499.1
Curli production assembly protein CsgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.756
OEG74122.1
Curlin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.597
OEG74121.1
Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.542
OEG74281.1
Curlin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.432
OEG74117.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.408
Your Current Organism:
Shewanella colwelliana
NCBI taxonomy Id: 23
Other names: ATCC 39565, ATCC BAA-642 [[Shewanella affinis Ivanova et al. 2004]], Alteromonas colwelliana, CIP 107703 [[Shewanella affinis Ivanova et al. 2004]], KMM 3587 [[Shewanella affinis Ivanova et al. 2004]], S. colwelliana, Shewanella affinis, Shewanella affinis Ivanova et al. 2004, strain LST-W
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