Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OEG74121.1Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
OEG75258.1
Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.989
OEG73224.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.989
OEG73579.1
TMAO reductase system sensor histidine kinase/response regulator TorS; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.906
OEG74119.1
Curli production assembly protein CsgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
OEG73840.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.847
OEG72498.1
Curli production assembly/transport component CsgE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.831
OEG74120.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.797
OEG73660.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
OEG72499.1
Curli production assembly protein CsgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.740
OEG72603.1
Two-component system sensor histidine kinase NarQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.707
Your Current Organism:
Shewanella colwelliana
NCBI taxonomy Id: 23
Other names: ATCC 39565, ATCC BAA-642 [[Shewanella affinis Ivanova et al. 2004]], Alteromonas colwelliana, CIP 107703 [[Shewanella affinis Ivanova et al. 2004]], KMM 3587 [[Shewanella affinis Ivanova et al. 2004]], S. colwelliana, Shewanella affinis, Shewanella affinis Ivanova et al. 2004, strain LST-W
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