Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OEG74250.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
OEG74251.1
FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.893
OEG74252.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.863
OEG74267.1
FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
OEG74268.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
OEG73437.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
OEG75131.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
OEG73436.1
Biotin attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
OEG74881.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.556
OEG75088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.553
OEG72005.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
Your Current Organism:
Shewanella colwelliana
NCBI taxonomy Id: 23
Other names: ATCC 39565, ATCC BAA-642 [[Shewanella affinis Ivanova et al. 2004]], Alteromonas colwelliana, CIP 107703 [[Shewanella affinis Ivanova et al. 2004]], KMM 3587 [[Shewanella affinis Ivanova et al. 2004]], S. colwelliana, Shewanella affinis, Shewanella affinis Ivanova et al. 2004, strain LST-W
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