Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OEG74839.1Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
OEG74840.1
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.992
OEG74838.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
OEG74841.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.960
OEG75057.1
Type IV-A pilus assembly ATPase PilB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
OEG73378.1
MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
OEG74836.1
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.918
OEG74837.1
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.895
OEG75059.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.892
OEG74842.1
Type II secretion system protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.887
OEG74834.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.854
Your Current Organism:
Shewanella colwelliana
NCBI taxonomy Id: 23
Other names: ATCC 39565, ATCC BAA-642 [[Shewanella affinis Ivanova et al. 2004]], Alteromonas colwelliana, CIP 107703 [[Shewanella affinis Ivanova et al. 2004]], KMM 3587 [[Shewanella affinis Ivanova et al. 2004]], S. colwelliana, Shewanella affinis, Shewanella affinis Ivanova et al. 2004, strain LST-W
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