STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH61994.1Hcp family T6SS protein CtsH1; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
AKH63636.1
Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.916
AKH61999.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.908
AKH61996.1
Type VI secretion protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.906
AKH63844.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AKH65236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AKH61993.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
AKH61998.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.878
AKH61997.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.856
AKH61995.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.839
AKH62512.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.808
Your Current Organism:
Photorhabdus thracensis
NCBI taxonomy Id: 230089
Other names: CIP 108426, DSM 15199, NCIMB 13952, P. thracensis, Photorhabdus luminescens subsp. thracensis, Photorhabdus luminescens subsp. thracensis Hazir et al. 2004, Photorhabdus temperata subsp. thracensis, Photorhabdus temperata subsp. thracensis (Hazir et al. 2004) Tailliez et al. 2010, strain 39-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.