STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH64031.14-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
AKH64025.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.907
AKH64026.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase; Catalyzes the formation of 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.895
AKH64030.1
4-hydroxyphenylacetate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.868
AKH64029.1
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.796
AKH64028.1
2-oxo-hepta-3-ene-1,7-dioate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.766
AKH64021.1
Homoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.714
flgG
Makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.666
AKH62068.1
Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.628
AKH62838.1
Transcriptional regulator; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.622
AKH64023.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.608
Your Current Organism:
Photorhabdus thracensis
NCBI taxonomy Id: 230089
Other names: CIP 108426, DSM 15199, NCIMB 13952, P. thracensis, Photorhabdus luminescens subsp. thracensis, Photorhabdus luminescens subsp. thracensis Hazir et al. 2004, Photorhabdus temperata subsp. thracensis, Photorhabdus temperata subsp. thracensis (Hazir et al. 2004) Tailliez et al. 2010, strain 39-8
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