STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH65248.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)    
Predicted Functional Partners:
AKH65250.1
Pvp sensor (virulence sensor protein bvgs); Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.766
AKH65249.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.730
AKH65247.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.
     
 0.465
AKH65246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
AKH65949.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
AKH65243.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
AKH65244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
AKH65245.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
AKH65242.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
AKH65241.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
Your Current Organism:
Photorhabdus thracensis
NCBI taxonomy Id: 230089
Other names: CIP 108426, DSM 15199, NCIMB 13952, P. thracensis, Photorhabdus luminescens subsp. thracensis, Photorhabdus luminescens subsp. thracensis Hazir et al. 2004, Photorhabdus temperata subsp. thracensis, Photorhabdus temperata subsp. thracensis (Hazir et al. 2004) Tailliez et al. 2010, strain 39-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.