Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
glnA | glnB_1 | GCA_000784355_00092 | GCA_000784355_00274 | Glutamine synthetase. | Nitrogen regulatory protein P-II. | 0.509 |
glnA | glnB_2 | GCA_000784355_00092 | GCA_000784355_00615 | Glutamine synthetase. | Nitrogen regulatory protein P-II. | 0.509 |
glnA | glnB_3 | GCA_000784355_00092 | GCA_000784355_01984 | Glutamine synthetase. | Nitrogen regulatory protein P-II. | 0.504 |
glnA | glnB_4 | GCA_000784355_00092 | GCA_000784355_01985 | Glutamine synthetase. | Nitrogen regulatory protein P-II. | 0.505 |
glnA | nadE_1 | GCA_000784355_00092 | GCA_000784355_00365 | Glutamine synthetase. | Glutamine-dependent NAD(+) synthetase. | 0.938 |
glnA | nagD | GCA_000784355_00092 | GCA_000784355_00276 | Glutamine synthetase. | Ribonucleotide monophosphatase NagD. | 0.427 |
glnA | nifH1_1 | GCA_000784355_00092 | GCA_000784355_01160 | Glutamine synthetase. | Nitrogenase iron protein 1. | 0.948 |
glnA | nifH1_2 | GCA_000784355_00092 | GCA_000784355_01608 | Glutamine synthetase. | Nitrogenase iron protein 1. | 0.948 |
glnA | nifH1_3 | GCA_000784355_00092 | GCA_000784355_01986 | Glutamine synthetase. | Nitrogenase iron protein 1. | 0.958 |
glnA | nrgA_2 | GCA_000784355_00092 | GCA_000784355_00275 | Glutamine synthetase. | Ammonium transporter NrgA. | 0.625 |
glnB_1 | glnA | GCA_000784355_00274 | GCA_000784355_00092 | Nitrogen regulatory protein P-II. | Glutamine synthetase. | 0.509 |
glnB_1 | glnB_3 | GCA_000784355_00274 | GCA_000784355_01984 | Nitrogen regulatory protein P-II. | Nitrogen regulatory protein P-II. | 0.419 |
glnB_1 | nadE_1 | GCA_000784355_00274 | GCA_000784355_00365 | Nitrogen regulatory protein P-II. | Glutamine-dependent NAD(+) synthetase. | 0.748 |
glnB_1 | nagD | GCA_000784355_00274 | GCA_000784355_00276 | Nitrogen regulatory protein P-II. | Ribonucleotide monophosphatase NagD. | 0.460 |
glnB_1 | nifH1_1 | GCA_000784355_00274 | GCA_000784355_01160 | Nitrogen regulatory protein P-II. | Nitrogenase iron protein 1. | 0.476 |
glnB_1 | nifH1_2 | GCA_000784355_00274 | GCA_000784355_01608 | Nitrogen regulatory protein P-II. | Nitrogenase iron protein 1. | 0.476 |
glnB_1 | nifH1_3 | GCA_000784355_00274 | GCA_000784355_01986 | Nitrogen regulatory protein P-II. | Nitrogenase iron protein 1. | 0.476 |
glnB_1 | nrgA_2 | GCA_000784355_00274 | GCA_000784355_00275 | Nitrogen regulatory protein P-II. | Ammonium transporter NrgA. | 0.983 |
glnB_2 | glnA | GCA_000784355_00615 | GCA_000784355_00092 | Nitrogen regulatory protein P-II. | Glutamine synthetase. | 0.509 |
glnB_2 | nadE_1 | GCA_000784355_00615 | GCA_000784355_00365 | Nitrogen regulatory protein P-II. | Glutamine-dependent NAD(+) synthetase. | 0.748 |
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