STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdkA3-deoxy-D-manno-octulosonic acid kinase. (286 aa)    
Predicted Functional Partners:
pnp_1
Polyribonucleotide nucleotidyltransferase.
   
 0.999
rpsK
30S ribosomal protein S11.
  
 0.999
rpsD
30S ribosomal protein S4.
   
 0.999
rpsE
30S ribosomal protein S5.
  
 
 0.999
rpsC
30S ribosomal protein S3.
    
 0.999
GCA_000784355_01237
Hypothetical protein.
  
 
  0.999
rpsS
30S ribosomal protein S19.
    
 0.997
GCA_000784355_00864
Hypothetical protein.
  
 
0.993
GCA_000784355_02652
Hypothetical protein.
  
 
 0.992
rsmA_3
Ribosomal RNA small subunit methyltransferase A.
  
 0.990
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.