STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmuU_1Hemin transport system permease protein HmuU. (359 aa)    
Predicted Functional Partners:
fecE_1
Fe(3+) dicitrate transport ATP-binding protein FecE.
 
 0.998
yclQ_1
Putative ABC transporter solute-binding protein YclQ.
 
 0.996
fecE_3
Fe(3+) dicitrate transport ATP-binding protein FecE.
 
 0.987
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
 0.987
yfmC_2
Fe(3+)-citrate-binding protein YfmC.
 
 0.984
GCA_000784355_01697
Hypothetical protein.
 
 0.984
fecE_2
Fe(3+) dicitrate transport ATP-binding protein FecE.
 
 0.983
btuF
Vitamin B12-binding protein.
 
 0.980
yusV
Putative siderophore transport system ATP-binding protein YusV.
 
 0.980
GCA_000784355_00811
Putative ABC transporter ATP-binding protein.
 
 0.977
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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