STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000784355_01703Putative ABC transporter ATP-binding protein. (609 aa)    
Predicted Functional Partners:
dppC
Dipeptide transport system permease protein DppC.
 
 0.999
gsiC
Glutathione transport system permease protein GsiC.
 
 0.995
appA
Oligopeptide-binding protein AppA.
 
 
 0.990
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT.
  
 0.976
nikQ
Nickel transport protein NikQ.
  
 0.976
cbiQ
Cobalt transport protein CbiQ.
  
 0.976
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
  
 0.976
GCA_000784355_01843
Hypothetical protein.
  
 
 0.954
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
 
0.875
ykoD_2
Putative HMP/thiamine import ATP-binding protein YkoD.
 
0.866
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.