STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcmProtein-L-isoaspartate O-methyltransferase. (204 aa)    
Predicted Functional Partners:
surE
5'-nucleotidase SurE.
  
 0.903
nadE_1
Glutamine-dependent NAD(+) synthetase.
     
 0.682
GCA_000784355_00520
Hypothetical protein.
 
    0.652
cshA
DEAD-box ATP-dependent RNA helicase CshA.
  
  
 0.615
GCA_000784355_01672
Hypothetical protein.
  
    0.585
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
  
  
 0.560
yrbG
Inner membrane protein YrbG.
  
    0.535
hycE_2
Formate hydrogenlyase subunit 5.
  
   0.518
eno
Enolase.
     
 0.515
GCA_000784355_01086
Hypothetical protein.
 
    0.498
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.