Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DmdB_1 | GCA_000784355_00730 | GCA_000784355_01912 | GCA_000784355_00730 | 2,3-dimethylmalate dehydratase small subunit. | Hypothetical protein. | 0.427 |
DmdB_1 | GCA_000784355_01121 | GCA_000784355_01912 | GCA_000784355_01121 | 2,3-dimethylmalate dehydratase small subunit. | Hypothetical protein. | 0.427 |
DmdB_1 | GCA_000784355_01909 | GCA_000784355_01912 | GCA_000784355_01909 | 2,3-dimethylmalate dehydratase small subunit. | Hypothetical protein. | 0.938 |
DmdB_1 | GCA_000784355_01913 | GCA_000784355_01912 | GCA_000784355_01913 | 2,3-dimethylmalate dehydratase small subunit. | Hypothetical protein. | 0.873 |
DmdB_1 | frdA | GCA_000784355_01912 | GCA_000784355_00696 | 2,3-dimethylmalate dehydratase small subunit. | Fumarate reductase flavoprotein subunit. | 0.517 |
DmdB_1 | frdB | GCA_000784355_01912 | GCA_000784355_00695 | 2,3-dimethylmalate dehydratase small subunit. | Fumarate reductase iron-sulfur subunit. | 0.475 |
DmdB_1 | hacA | GCA_000784355_01912 | GCA_000784355_01911 | 2,3-dimethylmalate dehydratase small subunit. | Homoaconitase large subunit. | 0.999 |
DmdB_1 | leuA_1 | GCA_000784355_01912 | GCA_000784355_01910 | 2,3-dimethylmalate dehydratase small subunit. | 2-isopropylmalate synthase. | 0.999 |
DmdB_1 | padE_1 | GCA_000784355_01912 | GCA_000784355_00030 | 2,3-dimethylmalate dehydratase small subunit. | NADH-dependent phenylglyoxylate dehydrogenase subunit gamma. | 0.447 |
GCA_000784355_00730 | DmdB_1 | GCA_000784355_00730 | GCA_000784355_01912 | Hypothetical protein. | 2,3-dimethylmalate dehydratase small subunit. | 0.427 |
GCA_000784355_00730 | GCA_000784355_01909 | GCA_000784355_00730 | GCA_000784355_01909 | Hypothetical protein. | Hypothetical protein. | 0.887 |
GCA_000784355_00730 | frdA | GCA_000784355_00730 | GCA_000784355_00696 | Hypothetical protein. | Fumarate reductase flavoprotein subunit. | 0.726 |
GCA_000784355_00730 | frdB | GCA_000784355_00730 | GCA_000784355_00695 | Hypothetical protein. | Fumarate reductase iron-sulfur subunit. | 0.737 |
GCA_000784355_00730 | hacA | GCA_000784355_00730 | GCA_000784355_01911 | Hypothetical protein. | Homoaconitase large subunit. | 0.444 |
GCA_000784355_00730 | leuA_1 | GCA_000784355_00730 | GCA_000784355_01910 | Hypothetical protein. | 2-isopropylmalate synthase. | 0.589 |
GCA_000784355_01121 | DmdB_1 | GCA_000784355_01121 | GCA_000784355_01912 | Hypothetical protein. | 2,3-dimethylmalate dehydratase small subunit. | 0.427 |
GCA_000784355_01121 | GCA_000784355_01909 | GCA_000784355_01121 | GCA_000784355_01909 | Hypothetical protein. | Hypothetical protein. | 0.801 |
GCA_000784355_01121 | frdA | GCA_000784355_01121 | GCA_000784355_00696 | Hypothetical protein. | Fumarate reductase flavoprotein subunit. | 0.758 |
GCA_000784355_01121 | frdB | GCA_000784355_01121 | GCA_000784355_00695 | Hypothetical protein. | Fumarate reductase iron-sulfur subunit. | 0.772 |
GCA_000784355_01121 | hacA | GCA_000784355_01121 | GCA_000784355_01911 | Hypothetical protein. | Homoaconitase large subunit. | 0.444 |
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