STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000784355_02222Hypothetical protein. (87 aa)    
Predicted Functional Partners:
GCA_000784355_01094
Hypothetical protein.
   
 0.983
GCA_000784355_00151
Hypothetical protein.
 
 
 0.979
hycE_2
Formate hydrogenlyase subunit 5.
   
  0.977
ndhI_5
NAD(P)H-quinone oxidoreductase subunit I.
   
 0.977
GCA_000784355_00066
Hypothetical protein.
   
 0.973
GCA_000784355_00703
Hypothetical protein.
   
 0.973
cshA
DEAD-box ATP-dependent RNA helicase CshA.
  
 0.972
GCA_000784355_02106
Hypothetical protein.
  
 0.972
ppiB
Peptidyl-prolyl cis-trans isomerase B.
    
 0.971
GCA_000784355_01473
Hypothetical protein.
   
  0.967
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.