STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatAGlutamyl-tRNA(Gln) amidotransferase subunit A. (434 aa)    
Predicted Functional Partners:
aspS2
Aspartate--tRNA(Asp/Asn) ligase.
 
 
 0.999
gatC
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C.
 
 0.999
gatB_2
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
 
 0.999
gatB_1
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
  
  
 0.994
ansA
Putative L-asparaginase.
    
 0.992
glnS
Glutamine--tRNA ligase.
  
 0.988
proS
Proline--tRNA ligase.
  
 0.975
topA
DNA topoisomerase 1.
     
 0.972
carB_1
Carbamoyl-phosphate synthase large chain.
 
 
 0.966
asnB_2
Asparagine synthetase B [glutamine-hydrolyzing].
    
 0.965
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.