STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000784355_02779Hypothetical protein. (243 aa)    
Predicted Functional Partners:
coaBC
Coenzyme A biosynthesis bifunctional protein CoaBC.
 
  
 0.999
thrB_2
Homoserine kinase.
 
  
 0.999
gadB
Glutamate decarboxylase.
    
 0.987
gadA
Glutamate decarboxylase alpha.
    
 0.938
GCA_000784355_02775
Hypothetical protein.
 
     0.913
rlmD
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.
 
     0.903
dnaX_3
DNA polymerase III subunit tau.
       0.890
GCA_000784355_02774
Hypothetical protein.
       0.887
panE
2-dehydropantoate 2-reductase.
 
  
 0.871
menG_2
Demethylmenaquinone methyltransferase.
       0.820
Your Current Organism:
Methanolacinia paynteri
NCBI taxonomy Id: 230356
Other names: ATCC 33997, DSM 2545, M. paynteri, Methanomicrobium paynteri, OCM 124, strain G-2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.