STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sm9_0835Hypothetical protein. (189 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase TrpS; Catalyzes the attachment of tryptophan to tRNA(Trp).
       0.823
endA
tRNA intron endonuclease EndA.
 
     0.638
sm9_1764
Redox-active disulfide protein.
  
     0.488
sm9_1693
Pyridoxal phosphate enzyme.
  
     0.474
sm9_2188
Transcriptional regulator LysR family.
 
    0.473
sm9_0831
Adhesin-like protein with transglutaminase domain.
 
     0.449
sm9_2154
Oligosaccharyl transferase.
  
     0.441
cbiA1
Cobyrinic acid a,c-diamide synthase CbiA1.
  
    0.439
cofE1
F420-0:gamma-glutamyl ligase CofE1.
  
    0.433
sm9_2114
Radical SAM domain-containing protein.
  
    0.427
Your Current Organism:
Methanobrevibacter millerae
NCBI taxonomy Id: 230361
Other names: DSM 16643, M. millerae, Methanobrevibacter millerae Rea et al. 2007, Methanobrevibacter sp. ZA-10, OCM 820, strain ZA-10
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