A0A5C3KFA6 protein (Coprinopsis marcescibilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3KFA6

Uncharacterized protein. (620 aa)

Predicted Functional Partners:

A0A5C3L083

0.880

A0A5C3KVK9

0.876

A0A5C3KRG7

0.837

A0A5C3KV06

0.837

A0A5C3L3F4

0.837

A0A5C3L5F1

0.837

A0A5C3KKP9

0.829

A0A5C3L9S2

0.814

A0A5C3LBX9

0.811

A0A5C3KKD7

0.780

Your Current Organism:

Coprinopsis marcescibilis

NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3KFA6	A0A5C3KKD7	Uncharacterized protein.	DnaJ-domain-containing protein.	0.780
A0A5C3KFA6	A0A5C3KKP9	Uncharacterized protein.	Heat shock protein.	0.829
A0A5C3KFA6	A0A5C3KRG7	Uncharacterized protein.	Flavin_Reduct domain-containing protein.	0.837
A0A5C3KFA6	A0A5C3KV06	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A5C3KFA6	A0A5C3KVK9	Uncharacterized protein.	UBA domain-containing protein.	0.876
A0A5C3KFA6	A0A5C3L083	Uncharacterized protein.	J domain-containing protein.	0.880
A0A5C3KFA6	A0A5C3L3F4	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A5C3KFA6	A0A5C3L5F1	Uncharacterized protein.	Heat-shock protein 90.	0.837
A0A5C3KFA6	A0A5C3L9S2	Uncharacterized protein.	HSP90-domain-containing protein.	0.814
A0A5C3KFA6	A0A5C3LBX9	Uncharacterized protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.811
A0A5C3KKD7	A0A5C3KFA6	DnaJ-domain-containing protein.	Uncharacterized protein.	0.780
A0A5C3KKD7	A0A5C3KKP9	DnaJ-domain-containing protein.	Heat shock protein.	0.899
A0A5C3KKD7	A0A5C3KVK9	DnaJ-domain-containing protein.	UBA domain-containing protein.	0.524
A0A5C3KKD7	A0A5C3L083	DnaJ-domain-containing protein.	J domain-containing protein.	0.826
A0A5C3KKP9	A0A5C3KFA6	Heat shock protein.	Uncharacterized protein.	0.829
A0A5C3KKP9	A0A5C3KKD7	Heat shock protein.	DnaJ-domain-containing protein.	0.899
A0A5C3KKP9	A0A5C3KRG7	Heat shock protein.	Flavin_Reduct domain-containing protein.	0.892
A0A5C3KKP9	A0A5C3KV06	Heat shock protein.	Uncharacterized protein.	0.892
A0A5C3KKP9	A0A5C3KVK9	Heat shock protein.	UBA domain-containing protein.	0.923
A0A5C3KKP9	A0A5C3L083	Heat shock protein.	J domain-containing protein.	0.911