STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3KMV5BZIP domain-containing protein. (753 aa)    
Predicted Functional Partners:
A0A5C3LC56
TFIID and SAGA subunit.
    
 0.675
A0A5C3KQT6
Uncharacterized protein.
    
 
 0.653
A0A5C3KT54
Pre-rRNA-processing protein IPI3.
    
 0.645
A0A5C3L894
TFIID domain-containing protein.
    
 0.643
A0A5C3KBI8
SCA7-domain-containing protein.
    
  0.640
A0A5C3KRY8
Atypical/PIKK/TRRAP protein kinase; Belongs to the PI3/PI4-kinase family.
    
  0.640
A0A5C3KB49
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
  0.639
A0A5C3L100
Uncharacterized protein.
    
 0.639
A0A5C3L4D8
TAF-domain-containing protein.
    
  0.638
A0A5C3L4I0
TAF6_C domain-containing protein.
    
  0.638
Your Current Organism:
Coprinopsis marcescibilis
NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis
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