STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3LBW5SRP40_C domain-containing protein. (404 aa)    
Predicted Functional Partners:
A0A5C3L4D0
Nop-domain-containing protein.
   
 
 0.982
A0A5C3KNW3
Nucleolar protein NOP58.
   
 
 0.977
A0A5C3LD43
Putative rRNA pseudouridine synthase.
   
 
 0.971
A0A5C3KGK1
Fibrillarin-like protein.
   
 
 0.966
A0A5C3KYV2
CBF-domain-containing protein.
   
   0.917
A0A5C3LBI0
Pseudouridylate synthase 4.
   
 
 0.908
A0A5C3KJF4
Ribosomal protein L1.
   
 
 0.891
A0A5C3L9Y9
NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.877
A0A5C3KY40
rRNA binding protein.
   
   0.868
A0A5C3KB36
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.867
Your Current Organism:
Coprinopsis marcescibilis
NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis
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