STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3LI21Uncharacterized protein. (395 aa)    
Predicted Functional Partners:
A0A5C3LQ71
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.817
A0A5C3KYZ8
Transcription elongation factor SPT5.
   
 0.816
A0A5C3KJ06
DNA-directed RNA polymerase II subunit.
    
 0.808
A0A5C3L2C1
DNA-directed RNA polymerase I.
    
 0.808
A0A5C3LAA1
Uncharacterized protein.
    
 0.808
A0A5C3LAB7
RPOL4c domain-containing protein.
    
 0.808
A0A5C3LDH2
Insert subdomain of RNA polymerase alpha subunit.
    
 0.808
A0A5C3LDL4
RNA polymerase Rpb6.
    
 0.808
A0A5C3LKW0
Uncharacterized protein.
    
 0.808
A0A5C3L0C4
DNA-directed RNA polymerase II.
    
 0.807
Your Current Organism:
Coprinopsis marcescibilis
NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis
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