Ro60 protein (Peromyscus maniculatus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Coexpression

Experiments

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[Homology]

Score

Ro60

Ro60, Y RNA binding protein. (538 aa)

Predicted Functional Partners:

Trim21

0.936

Trim58

0.895

Ssb

0.849

Cenpb

0.563

Hars2

0.539

Ago2

0.513

Xpot

0.508

Mog

0.506

Trim11

0.489

ENSPEMP00000029266

0.489

Your Current Organism:

Peromyscus maniculatus

NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ago2	Ro60	ENSPEMP00000005773	ENSPEMP00000001649	Argonaute RISC catalytic subunit 2.	Ro60, Y RNA binding protein.	0.513
Cenpb	Ro60	ENSPEMP00000003702	ENSPEMP00000001649	Centromere protein B.	Ro60, Y RNA binding protein.	0.563
ENSPEMP00000029266	Ro60	ENSPEMP00000029266	ENSPEMP00000001649	annotation not available	Ro60, Y RNA binding protein.	0.489
Hars2	Ro60	ENSPEMP00000015483	ENSPEMP00000001649	histidyl-tRNA synthetase 2.	Ro60, Y RNA binding protein.	0.539
Mog	Ro60	ENSPEMP00000027187	ENSPEMP00000001649	Myelin oligodendrocyte glycoprotein.	Ro60, Y RNA binding protein.	0.506
Ro60	Ago2	ENSPEMP00000001649	ENSPEMP00000005773	Ro60, Y RNA binding protein.	Argonaute RISC catalytic subunit 2.	0.513
Ro60	Cenpb	ENSPEMP00000001649	ENSPEMP00000003702	Ro60, Y RNA binding protein.	Centromere protein B.	0.563
Ro60	ENSPEMP00000029266	ENSPEMP00000001649	ENSPEMP00000029266	Ro60, Y RNA binding protein.	annotation not available	0.489
Ro60	Hars2	ENSPEMP00000001649	ENSPEMP00000015483	Ro60, Y RNA binding protein.	histidyl-tRNA synthetase 2.	0.539
Ro60	Mog	ENSPEMP00000001649	ENSPEMP00000027187	Ro60, Y RNA binding protein.	Myelin oligodendrocyte glycoprotein.	0.506
Ro60	Ssb	ENSPEMP00000001649	ENSPEMP00000025267	Ro60, Y RNA binding protein.	Sjogren syndrome antigen B.	0.849
Ro60	Trim11	ENSPEMP00000001649	ENSPEMP00000013187	Ro60, Y RNA binding protein.	Tripartite motif containing 11.	0.489
Ro60	Trim21	ENSPEMP00000001649	ENSPEMP00000012574	Ro60, Y RNA binding protein.	Tripartite motif containing 21.	0.936
Ro60	Trim58	ENSPEMP00000001649	ENSPEMP00000024219	Ro60, Y RNA binding protein.	Tripartite motif containing 58.	0.895
Ro60	Xpot	ENSPEMP00000001649	ENSPEMP00000002429	Ro60, Y RNA binding protein.	Exportin for tRNA.	0.508
Ssb	Ro60	ENSPEMP00000025267	ENSPEMP00000001649	Sjogren syndrome antigen B.	Ro60, Y RNA binding protein.	0.849
Trim11	Ro60	ENSPEMP00000013187	ENSPEMP00000001649	Tripartite motif containing 11.	Ro60, Y RNA binding protein.	0.489
Trim21	Ro60	ENSPEMP00000012574	ENSPEMP00000001649	Tripartite motif containing 21.	Ro60, Y RNA binding protein.	0.936
Trim58	Ro60	ENSPEMP00000024219	ENSPEMP00000001649	Tripartite motif containing 58.	Ro60, Y RNA binding protein.	0.895
Xpot	Ro60	ENSPEMP00000002429	ENSPEMP00000001649	Exportin for tRNA.	Ro60, Y RNA binding protein.	0.508