Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AmtAminomethyltransferase. (403 aa)    
Predicted Functional Partners:
Gldc
Glycine decarboxylase.
 0.999
Gcsh
Glycine cleavage system protein H.
 
 0.999
ENSPEMP00000034686
annotation not available
  
 0.998
Dld
Dihydrolipoamide dehydrogenase.
  
 0.996
Mthfd2
annotation not available
  
 
 0.991
Shmt2
Serine hydroxymethyltransferase 2.
  
 0.991
Mthfd2l
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like.
  
 
 0.991
Shmt1
Serine hydroxymethyltransferase 1.
  
 0.988
Gart
annotation not available
  
 
 0.984
Atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
  
 
 0.975
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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