Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Vps8VPS8 CORVET complex subunit. (1398 aa)    
Predicted Functional Partners:
Vps33a
VPS33A CORVET/HOPS core subunit.
    
 0.999
Vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
Vps16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
Vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 0.999
Tgfbrap1
Transforming growth factor beta receptor associated protein 1.
   
 0.999
Vps39
VPS39 subunit of HOPS complex.
   
 0.985
Vps33b
Vacuolar protein sorting 33B.
    
 0.978
Rab5a
RAB5A, member RAS oncogene family.
    
 0.972
Rab5c
RAB5C, member RAS oncogene family.
    
 0.966
Vps41
VPS41 subunit of HOPS complex.
   
 
 0.948
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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