STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm7aLysine (K)-specific demethylase 7A. (942 aa)    
Predicted Functional Partners:
Kdm6b
KDM1 lysine (K)-specific demethylase 6B.
   
 0.900
Suv39h1
Suppressor of variegation 3-9 1.
    
 0.836
Suv39h2
Suppressor of variegation 3-9 2.
    
 0.836
ENSPEMP00000020728
annotation not available
    
 0.813
Skp1a
S-phase kinase associated protein 1.
    
 0.813
Arid5b
AT-rich interaction domain 5B.
    
 0.786
Kdm6a
Lysine demethylase 6A.
   
 0.782
Phf2
PHD finger protein 2.
     
  0.767
Kdm3b
KDM3B lysine (K)-specific demethylase 3B.
     
 0.765
Kdm5a
Lysine demethylase 5A.
   
 
 0.758
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.