STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nid1Nidogen 1. (1238 aa)    
Predicted Functional Partners:
Lamc1
Laminin subunit gamma 1.
   
 0.989
Hspg2
Heparan sulfate proteoglycan 2.
   
 0.985
Lamc3
Laminin gamma 3.
   
 0.907
Egflam
EGF like, fibronectin type III and laminin G domains.
   
 0.860
Lama4
Laminin subunit alpha 4.
   
 0.848
Lama2
Laminin subunit alpha 2.
   
 0.829
Lamc2
Laminin subunit gamma 2.
   
 0.822
ENSPEMP00000030531
annotation not available
   
 0.777
Vtn
Vitronectin.
     
 0.776
Ush2a
Usherin.
   
 0.768
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.