Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tigd3Tigger transposable element derived 3. (475 aa)    
Predicted Functional Partners:
Ctps
CTP synthase 1.
    
   0.989
Ctps2
Cytidine 5'-triphosphate synthase 2.
    
   0.961
Pogk
Pogo transposable element with KRAB domain.
      
 0.731
Ube2i
Ubiquitin conjugating enzyme E2 I.
    
  0.720
ENSPEMP00000015080
annotation not available
    
  0.720
Kctd2
Potassium channel tetramerisation domain containing 2.
    
  0.611
Naif1
Nuclear apoptosis inducing factor 1.
   
  
 0.601
Setmar
Histone-lysine N-methyltransferase SETMAR.
   
 
 0.600
Klhdc8b
Kelch domain containing 8B.
      
 0.582
Zzef1
Zinc finger, ZZ-type with EF hand domain 1.
    
 
 0.564
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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