STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GldcGlycine decarboxylase. (1024 aa)    
Predicted Functional Partners:
Amt
Aminomethyltransferase.
 0.998
Gcsh
Glycine cleavage system protein H.
 
 0.994
Sardh
Sarcosine dehydrogenase.
  
 0.981
Shmt1
Serine hydroxymethyltransferase 1.
  
 
 0.978
Shmt2
Serine hydroxymethyltransferase 2.
  
 
 0.978
Pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.974
Dmgdh
Dimethylglycine dehydrogenase precursor.
  
 0.974
Gart
annotation not available
  
  
 0.954
Mthfd2
annotation not available
  
 
 0.943
Mthfd2l
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like.
  
 
 0.943
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.