STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cop1COP1, E3 ubiquitin ligase. (721 aa)    
Predicted Functional Partners:
Ddb1
Damage specific DNA binding protein 1.
    
 0.993
Cul4a
Cullin 4A.
    
 0.989
ENSPEMP00000031358
annotation not available
    
 0.987
ENSPEMP00000034938
annotation not available
    
 0.987
Cul4b
Cullin 4B.
    
 0.972
Rbx1
Ring-box 1.
    
 0.969
Dda1
DET1 and DDB1 associated 1.
    
  0.956
Ddb2
Damage specific DNA binding protein 2.
    
 0.954
Trp53
Transformation related protein 53.
    
 0.927
ENSPEMP00000031900
annotation not available
    
 0.927
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.