STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trim21Tripartite motif containing 21. (463 aa)    
Predicted Functional Partners:
Isg15
ISG15 ubiquitin like modifier.
   
 0.939
Ro60
Ro60, Y RNA binding protein.
    
 0.936
Ube2e1
Ubiquitin conjugating enzyme E2 E1.
    
 0.898
Uba52
KxDL motif containing 1.
    
  0.894
Ddx58
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58.
   
 0.861
Rps27a
Ribosomal protein S27a.
    
  0.860
ENSPEMP00000017817
annotation not available
    
  0.860
Sqstm1
Sequestosome 1.
    
 0.857
Ddx41
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41.
    
 0.836
Irf3
Interferon regulatory factor 3.
   
 0.807
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.