STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zfp213Zinc finger protein 213. (473 aa)    
Predicted Functional Partners:
Zscan20
Zinc finger and SCAN domains 20.
  
 
  
0.803
Zscan29
Zinc finger SCAN domains 29.
    
  
0.776
Zfp397
Zinc finger protein 397.
  
  
0.726
Zscan22
Zinc finger and SCAN domain containing 22.
  
  
0.725
Ccdc105
Coiled-coil domain containing 105.
    
 0.592
Trim28
Tripartite motif containing 28.
    
  0.587
Lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.574
Mrps11
Mitochondrial ribosomal protein S11.
    
  0.564
Scand1
SCAN domain containing 1.
    
  
0.556
Mrps28
Mitochondrial ribosomal protein S28.
    
  0.554
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.