STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdelr1KDEL endoplasmic reticulum protein retention receptor 1. (212 aa)    
Predicted Functional Partners:
Copb1
Coatomer protein complex subunit beta 1.
   
 0.883
Surf4
Surfeit 4.
   
 0.864
LOC102917034
Transmembrane emp24 domain-containing protein 10.
   
 0.823
ENSPEMP00000015230
annotation not available
   
 0.823
Arfgap1
ADP ribosylation factor GTPase activating protein 1.
    
 0.785
ENSPEMP00000029911
annotation not available
    
 0.785
Arcn1
Archain 1.
   
 
 0.784
Gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.779
Copb2
Coatomer protein complex subunit beta 2.
   
 
 0.771
Ykt6
YKT6 v-SNARE homolog.
   
 
 0.765
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.