STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vta1Vesicle trafficking 1. (306 aa)    
Predicted Functional Partners:
Vps4a
Vacuolar protein sorting 4A.
   
 0.993
Vps4b
Vacuolar protein sorting 4 homolog B.
   
 0.993
2610002M06Rik
Charged multivesicular body protein 1b-2.
    
 0.989
Ist1
IST1 factor associated with ESCRT-III.
   
 
 0.987
Chmp1a
Charged multivesicular body protein 1A.
    
 0.987
ENSPEMP00000030570
annotation not available
    
 0.987
Chmp5
Charged multivesicular body protein 5.
   
 0.986
ENSPEMP00000022136
annotation not available
   
 0.986
Chmp2a
Charged multivesicular body protein 2A.
    
 0.982
ENSPEMP00000003789
annotation not available
    
 0.981
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.