STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YrdcyrdC domain containing (E.coli). (280 aa)    
Predicted Functional Partners:
Osgepl1
O-sialoglycoprotein endopeptidase like 1.
  
 
 0.931
Osgep
O-sialoglycoprotein endopeptidase.
  
 
 0.931
ENSPEMP00000034196
annotation not available
  
 
  0.818
Pudp
Pseudouridine-5'-phosphatase-like.
  
 
  0.818
Rad50
RAD50 double strand break repair protein.
  
   0.765
Spin1
Spindlin 1.
    
   0.763
Hemk1
HemK methyltransferase family member 1.
  
  
 0.704
N6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
  
 0.704
Mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.678
Elp3
Elongator acetyltransferase complex subunit 3.
  
   0.668
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.