STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myod1Myogenic differentiation 1. (315 aa)    
Predicted Functional Partners:
Tcf3
Transcription factor 3.
    
 0.976
Tcf4
Transcription factor 4.
    
 0.970
Tcf12
Transcription factor 12.
    
 0.955
Ep300
E1A binding protein p300.
    
 
 0.954
Id1
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.928
Myog
Myogenin.
  
 
0.912
Kat2a
Lysine acetyltransferase 2A.
    
 
 0.911
Crebbp
CREB binding protein.
    
 
 0.890
Tbp
TATA box binding protein.
    
 0.884
Mef2a
Myocyte enhancer factor 2A.
    
 0.875
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.