STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col11a1Collagen, type XI, alpha 1. (1804 aa)    
Predicted Functional Partners:
Col1a2
Collagen, type I, alpha 2.
  
0.973
Col5a2
Collagen, type V, alpha 2.
  
0.968
Col2a1
Collagen type II alpha 1 chain.
  
0.963
Col1a1
Collagen type I alpha 1 chain.
  
0.961
Col3a1
Collagen type III alpha 1 chain.
  
 
0.950
Lum
Lumican.
   
 0.934
Col5a1
Collagen type V alpha 1 chain.
  
 
0.910
Col5a3
Collagen type V alpha 3 chain.
  
  
 
0.898
Col16a1
Collagen, type XVI, alpha 1.
   
0.897
Col27a1
Collagen type XXVII alpha 1 chain.
  
  
0.882
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.