STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trim3Tripartite motif-containing 3. (744 aa)    
Predicted Functional Partners:
Rps27a
Ribosomal protein S27a.
    
  0.893
ENSPEMP00000017817
annotation not available
    
  0.893
Actn4
Actinin alpha 4.
    
 
 0.796
Ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
  0.759
Ube2d2b
Ubiquitin-conjugating enzyme E2 D2B.
    
 0.752
ENSPEMP00000008991
annotation not available
    
  0.748
Ube2d1
Ubiquitin conjugating enzyme E2 D1.
    
  0.748
LOC102922622
Ubiquitin-conjugating enzyme E2 D2-like.
    
  0.748
ENSPEMP00000033453
annotation not available
    
  0.748
Ube2d3
Ubiquitin conjugating enzyme E2 D3.
    
  0.748
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.