STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf19pre-mRNA processing factor 19. (523 aa)    
Predicted Functional Partners:
Crnkl1
Crooked neck-like protein 1.
   
 0.999
Rbm22
RNA binding motif protein 22.
   
 0.999
Eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
Isy1
ISY1 splicing factor homolog.
    
 0.999
ENSPEMP00000005468
annotation not available
   
 0.999
Syf2
SYF2 pre-mRNA splicing factor.
    
 0.999
Sf3b1
Splicing factor 3b, subunit 1.
   
 0.999
Bud31
BUD31 homolog.
    
 0.999
Plrg1
Pleiotropic regulator 1.
   
0.999
Ppie
Peptidylprolyl isomerase E (cyclophilin E).
    
 0.999
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.