STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubp1Upstream binding protein 1. (540 aa)    
Predicted Functional Partners:
Tfcp2
Transcription factor CP2.
  
 
  
0.883
Tfcp2l1
Transcription factor CP2 like 1.
  
 
  
0.739
Ankrd29
Ankyrin repeat domain 29.
    
   0.701
Mthfd2
annotation not available
    
   0.568
Tbp
TATA box binding protein.
    
 0.557
Tbpl2
TATA-box binding protein like 2.
    
  0.555
Pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
   
 
  0.539
Tbpl1
TATA-box binding protein like 1.
    
  0.535
4833427G06Rik
RIKEN cDNA 4833427G06 gene.
    
  0.535
Phf1
PHD finger protein 1.
    
  0.531
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.