STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kctd9Potassium channel tetramerisation domain containing 9. (389 aa)    
Predicted Functional Partners:
Top2b
DNA topoisomerase II beta.
   
 
 0.943
Top2a
Topoisomerase (DNA) II alpha.
   
 
 0.943
Mocs1
Molybdenum cofactor synthesis 1.
  
 
  0.862
Hddc3
HD domain containing 3.
    
  0.854
Cul3
Cullin 3.
    
 0.829
Kmt5b
Lysine methyltransferase 5B.
    
  0.805
Kmt5c
Lysine methyltransferase 5C.
    
  0.805
Pkm
Pyruvate kinase M1/2.
   
 0.796
Parp6
poly(ADP-ribose) polymerase family member 6.
   
 0.796
Pklr
Pyruvate kinase liver and red blood cell.
   
 0.796
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.