STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tdp1tyrosyl-DNA phosphodiesterase 1. (608 aa)    
Predicted Functional Partners:
Lig3
Ligase III, DNA, ATP-dependent.
   
 
 0.935
ENSPEMP00000004237
annotation not available
    
 
 0.934
ENSPEMP00000024873
annotation not available
    
 
 0.934
Polb
DNA polymerase beta.
    
 
 0.933
Top1mt
DNA topoisomerase I mitochondrial.
    
 
 0.926
Ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 
 0.921
Aplf
Aprataxin and PNKP like factor.
    
 
 0.874
Xrcc5
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.857
Xrcc1
X-ray repair cross complementing 1.
   
 
 0.856
Xrcc6
X-ray repair cross complementing 6.
     
 0.848
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.