STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MagohMago homolog, exon junction complex subunit. (146 aa)    
Predicted Functional Partners:
ENSPEMP00000020018
annotation not available
   
 0.993
Eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.992
Casc3
CASC3 exon junction complex subunit.
    
 0.991
Pym1
PYM homolog 1, exon junction complex associated factor.
    
 0.990
Srsf1
Serine/arginine-rich splicing factor 1.
   
 0.985
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.983
ENSPEMP00000036168
annotation not available
   
 0.980
Snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.969
Upf3a
UPF3 regulator of nonsense transcripts homolog A (yeast).
    
 0.968
ENSPEMP00000030399
annotation not available
   
  0.968
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.