STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rc3h2Ring finger and CCCH-type domains 2. (1188 aa)    
Predicted Functional Partners:
Rc3h1
Ring finger and CCCH-type domains 1.
  
 
  
0.884
Mysm1
Myb like, SWIRM and MPN domains 1.
   
   0.882
Trip12
Thyroid hormone receptor interactor 12.
   
    0.846
Xrn1
5'-3' exoribonuclease 1.
   
 
 0.844
Aff4
AF4/FMR2 family member 4.
   
 
 0.843
ENSPEMP00000014818
annotation not available
   
 
 0.818
ENSPEMP00000030761
annotation not available
   
 
 0.818
Ubr1
Ubiquitin protein ligase E3 component n-recognin 1.
   
  
 0.814
Smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
    0.812
Med13
Mediator complex subunit 13.
   
    0.812
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.