STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmp2Matrix metallopeptidase 2. (662 aa)    
Predicted Functional Partners:
Timp2
TIMP metallopeptidase inhibitor 2.
   
 0.991
Timp3
TIMP metallopeptidase inhibitor 3.
   
 0.975
Mmp14
Matrix metallopeptidase 14.
   
0.947
Thbs1
Thrombospondin 1.
    
 0.918
Timp1
Tissue inhibitor of metalloproteinase 1.
   
 0.912
Vegfa
Vascular endothelial growth factor A.
     
 0.897
Src
SRC proto-oncogene, non-receptor tyrosine kinase.
    
 0.884
LOC102906935
Interstitial collagenase A-like.
   
 
0.880
Tnc
Tenascin C.
   
 0.877
Edn1
Endothelin 1.
     
 0.874
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.