STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
4933430I17RikRIKEN cDNA 4933430I17 gene. (480 aa)    
Predicted Functional Partners:
CN725425
cDNA sequence CN725425.
  
   
 0.602
Tmco5
Transmembrane and coiled-coil domains 5.
      
 0.521
Mageb16
Melanoma antigen family B, 16.
      
 0.483
Tnfsf4
TNF superfamily member 4.
  
     0.477
Zbp1
Z-DNA binding protein 1.
  
     0.469
Zfand4
Zinc finger AN1-type containing 4.
      
 0.456
Pkdrej
Polycystin (PKD) family receptor for egg jelly.
      
 0.450
Fam209
Protein FAM209A.
      
 0.450
ENSPEMP00000025371
annotation not available
  
     0.449
Ccdc136
Coiled-coil domain containing 136.
  
     0.443
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.